Following short script may be executed before dmg packaging to remove -isysroot:
=========== #!/bin/bash FILE="/Applications/GRASS-7.9.app/Contents/Resources/include/Make/Platform.make" sed -i .bak 's|-isysroot /Users/cmbarton/SDKs/MacOSX10.14.sdk||g' $FILE =========== > On 6 Aug 2020, at 11:07, Nicklas Larsson <n_lars...@yahoo.com> wrote: > > Michael, > > You may try without setting SDK at all (remove --with-macosx-sdk= and > CONDA_BUILD_SYSROOT), but I doubt it will. CONDA_BUILD_SYSROOT is not a > workaround, it’s needed for conda. > > (If indeed necessary to set SDK, it might be better to use: > CONDA_BUILD_SYSROOT=$(xcrun --show-sdk-path) to use present SDK while > building GRASS, but make sure to set MACOSX_DEPLOYMENT_TARGET.) > > > What seems to work for compiling extensions, is modifying the file: > > /Applications/GRASS-7.9.app/Contents/Resources/include/Make/Platform.make > > deleting the 4 instances of the text: > > -isysroot /Users/cmbarton/SDKs/MacOSX10.14.sdk > > I cannot however tell whether this works without Xcode. > > Best, > Nicklas > > >> On 6 Aug 2020, at 00:48, Michael Barton <michael.bar...@asu.edu >> <mailto:michael.bar...@asu.edu>> wrote: >> >> This has to do with some kind of change in master (not in v. 7.8.4dev as of >> 25 July) that caused configure to fail with a bogus missing zlib message. >> Nicklas found a workaround by adding >> >> export CONDA_BUILD_SYSROOT=[hard path to SDK] >> >> to the configure script. But that is now causing problems with compiling >> through g.extension. So we need to find out why configure is failing. >> >> I've filed a bug report at: https://github.com/OSGeo/grass/issues/880 >> <https://github.com/OSGeo/grass/issues/880> >> >> >> Michael >> ____________________ >> C. Michael Barton >> Director, Center for Social Dynamics & Complexity >> Director, Network for Computational Modeling in Social & Ecological Sciences >> Professor of Anthropology, School of Human Evolution & Social Change >> Head, Graduate Faculty in Complex Adaptive Systems Science >> Arizona State University >> >> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >> www: 'http://www.public.asu.edu/~cmbarton >> <http://www.public.asu.edu/~cmbarton>, https://complexity.asu.edu/csdc' >> <https://complexity.asu.edu/csdc'> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>> On Aug 5, 2020, at 3:16 PM, Michael Barton <michael.bar...@asu.edu >>> <mailto:michael.bar...@asu.edu>> wrote: >>> >>> It's better if the binary does not need any SDK so people can use it >>> without installing Xcode. It really shouldn't be necessary. There should be >>> all the tools needed for compiling within the miniconda package installed >>> in the app. I'm pretty sure I know what line in configure is causing this. >>> Need to see how to get around it. >>> >>> Michael >>> ____________________ >>> C. Michael Barton >>> Director, Center for Social Dynamics & Complexity >>> Director, Network for Computational Modeling in Social & Ecological Sciences >>> Professor of Anthropology, School of Human Evolution & Social Change >>> Head, Graduate Faculty in Complex Adaptive Systems Science >>> Arizona State University >>> >>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>> www: 'http://www.public.asu.edu/~cmbarton >>> <http://www.public.asu.edu/~cmbarton>, https://complexity.asu.edu/csdc' >>> <https://complexity.asu.edu/csdc'> >>> >>> >>> >>>> On Aug 5, 2020, at 3:04 PM, Steven Pawley <dr.stevenpaw...@gmail.com >>>> <mailto:dr.stevenpaw...@gmail.com>> wrote: >>>> >>>> I’m on 10.15 (on a relatively new Mac) and officially Xcode only ships >>>> with the latest SDK. I think unofficially it might be possible to copy >>>> older SDKs into the Xcode app bundle but presumably not ideal. >>>> >>>> >>>>> On Aug 5, 2020, at 3:46 PM, Michael Barton <michael.bar...@asu.edu >>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>> >>>>> This error implies that you need the 10.14.sdk folder. Why would that be >>>>> so? That would be a problem. >>>>> >>>>> Michael >>>>> ____________________ >>>>> C. Michael Barton >>>>> Director, Center for Social Dynamics & Complexity >>>>> Director, Network for Computational Modeling in Social & Ecological >>>>> Sciences >>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>> Arizona State University >>>>> >>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=HdCFQffudEp5qahnvPaiTLzJsh65rn-5Ab710fbU1vY&s=fyXN3VStjHZGCQbsYN2_xQ13D7SMjIs8kHrGU5a2_jY&e=>, >>>>> https://complexity.asu.edu/csdc' >>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=HdCFQffudEp5qahnvPaiTLzJsh65rn-5Ab710fbU1vY&s=m8TFRpKA72VXur99soNzYcxoGw5_Ss7Q1bEWk22hE6U&e=> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>>> On Aug 5, 2020, at 2:39 PM, Steven Pawley <dr.stevenpaw...@gmail.com >>>>>> <mailto:dr.stevenpaw...@gmail.com>> wrote: >>>>>> >>>>>> Hi Michael, >>>>>> >>>>>> Thanks for updating. I can still install python-based extensions without >>>>>> any error, however I still get the same error for compiled code: >>>>>> >>>>>> g.extension extension=r.fill.gaps >>>>>> >>>>>> Fetching <r.fill.gaps> from GRASS GIS Addons repository (be patient)... >>>>>> Compiling... >>>>>> clang-10: warning: no such sysroot directory: >>>>>> '/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot] >>>>>> cell_funcs.c:21:10: fatal error: 'math.h' file not found >>>>>> #include <math.h> >>>>>> ^~~~~~~~ >>>>>> 1 error generated. >>>>>> make: *** [OBJ.x86_64-apple-darwin19.6.0/cell_funcs.o] Error >>>>>> 1 >>>>>> ERROR: Compilation failed, sorry. Please check above error messages. >>>>>> >>>>>> Steve >>>>>> >>>>>>> On Aug 5, 2020, at 2:00 PM, Michael Barton <michael.bar...@asu.edu >>>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>>> >>>>>>> Steve, >>>>>>> >>>>>>> I just now posted a new updated GRASS 7.9dev that includes svn in the >>>>>>> app. It solved the g.extension problem for me. Can you test and see if >>>>>>> it solves it for you too? >>>>>>> >>>>>>> Michael >>>>>>> ____________________ >>>>>>> C. Michael Barton >>>>>>> Director, Center for Social Dynamics & Complexity >>>>>>> Director, Network for Computational Modeling in Social & Ecological >>>>>>> Sciences >>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>>> Arizona State University >>>>>>> >>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, >>>>>>> https://complexity.asu.edu/csdc' >>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>>> On Aug 4, 2020, at 11:59 AM, Michael Barton <michael.bar...@asu.edu >>>>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>>>> >>>>>>>> I'm pretty sure this happened when I installed developer tools 11.5 >>>>>>>> >>>>>>>> I want to make sure that anyone using the binaries can do so without >>>>>>>> having to separately install any dependencies. So I'll see what >>>>>>>> happens if I just include svn in the app. I will need to test on a >>>>>>>> system that suffers from this lack. >>>>>>>> >>>>>>>> Michael >>>>>>>> ____________________ >>>>>>>> C. Michael Barton >>>>>>>> Director, Center for Social Dynamics & Complexity >>>>>>>> Director, Network for Computational Modeling in Social & Ecological >>>>>>>> Sciences >>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>>>> Arizona State University >>>>>>>> >>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=bm8GNsnlGrRMgk5Aw-PILxKCHgti6ue1ipDNLN5bS8o&e=>, >>>>>>>> https://complexity.asu.edu/csdc' >>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=2Gr42Gr6-mCS6vSIKkL1gNxGKhgP9akeCkWc5-eOGZ8&s=h-op3BcIQNfbjiQKiuUA4VsQRB09LrvWPs0cx0vmmAc&e=> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>>> On Aug 4, 2020, at 11:56 AM, Steven Pawley <dr.stevenpaw...@gmail.com >>>>>>>>> <mailto:dr.stevenpaw...@gmail.com>> wrote: >>>>>>>>> >>>>>>>>> Hi Michael, >>>>>>>>> >>>>>>>>> Right, I do have svn installed via Homebrew (I get 'Type 'svn help' >>>>>>>>> for usage.’), so that probably explains why g.extension works for me >>>>>>>>> overall, apart from the issue with finding the MacOS SDK. >>>>>>>>> >>>>>>>>> Steve >>>>>>>>> >>>>>>>>>> On Aug 4, 2020, at 11:27 AM, Michael Barton <michael.bar...@asu.edu >>>>>>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>>>>>> >>>>>>>>>> Steven, >>>>>>>>>> >>>>>>>>>> What happens if you open a terminal window and type 'svn' followed >>>>>>>>>> by a return? >>>>>>>>>> >>>>>>>>>> Michael >>>>>>>>>> ____________________ >>>>>>>>>> C. Michael Barton >>>>>>>>>> Director, Center for Social Dynamics & Complexity >>>>>>>>>> Director, Network for Computational Modeling in Social & Ecological >>>>>>>>>> Sciences >>>>>>>>>> Professor of Anthropology, School of Human Evolution & Social Change >>>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>>>>>> Arizona State University >>>>>>>>>> >>>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=6KybHpYJMo7V86xk_1VxAmD-_UolxXaQfLvYShRFgpk&e=>, >>>>>>>>>> https://complexity.asu.edu/csdc' >>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=abWZQP3dzmM5KTmBUXPwvqbzQUlMgfhQzUGEr0HevTo&e=> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> On Aug 3, 2020, at 6:53 PM, Steven Pawley >>>>>>>>>>> <dr.stevenpaw...@gmail.com <mailto:dr.stevenpaw...@gmail.com>> >>>>>>>>>>> wrote: >>>>>>>>>>> >>>>>>>>>>> Perhaps a different issue, but I can install extensions, but only >>>>>>>>>>> pure python-based extensions. Anything that requires compilation of >>>>>>>>>>> C code fails. >>>>>>>>>>> >>>>>>>>>>> For example, when using the latest GRASS GIS binary (7.9, 25th July >>>>>>>>>>> 2020 build), this works with r.texture.tiled: >>>>>>>>>>> >>>>>>>>>>> Fetching <r.texture.tiled> from GRASS GIS Addons repository (be >>>>>>>>>>> patient)... >>>>>>>>>>> Compiling... >>>>>>>>>>> Installing... >>>>>>>>>>> Updating extensions metadata file... >>>>>>>>>>> Updating extension modules metadata file... >>>>>>>>>>> Installation of <r.texture.tiled> successfully finished >>>>>>>>>>> >>>>>>>>>>> But for example, r.fill.gaps does not: >>>>>>>>>>> >>>>>>>>>>> g.extension extension=r.fill.gaps >>>>>>>>>>> >>>>>>>>>>> Fetching <r.fill.gaps> from GRASS GIS Addons repository (be >>>>>>>>>>> patient)... >>>>>>>>>>> Compiling... >>>>>>>>>>> clang-10: warning: no such sysroot directory: >>>>>>>>>>> '/Users/cmbarton/SDKs/MacOSX10.14.sdk' [-Wmissing-sysroot] >>>>>>>>>>> cell_funcs.c:21:10: fatal error: 'math.h' file not found >>>>>>>>>>> #include <math.h> >>>>>>>>>>> ^~~~~~~~ >>>>>>>>>>> 1 error generated. >>>>>>>>>>> make: *** [OBJ.x86_64-apple-darwin19.5.0/cell_funcs.o] Error >>>>>>>>>>> 1 >>>>>>>>>>> ERROR: Compilation failed, sorry. Please check above error messages. >>>>>>>>>>> >>>>>>>>>>> The 7.9-dev build throws an error because it appears to be still >>>>>>>>>>> looking for components based on your system, specifically.,The >>>>>>>>>>> 7.8.4 binary (16th July 2020 build) also throws the same error. I’m >>>>>>>>>>> running the MacOS 10.15.6. >>>>>>>>>>> >>>>>>>>>>> Steve >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>>> On Aug 2, 2020, at 4:44 PM, Michael Barton <michael.bar...@asu.edu >>>>>>>>>>>> <mailto:michael.bar...@asu.edu>> wrote: >>>>>>>>>>>> >>>>>>>>>>>> I just learned yesterday, when I tried to install something from >>>>>>>>>>>> g.extension that: >>>>>>>>>>>> >>>>>>>>>>>> 1. g.extension uses svn to download packages, and >>>>>>>>>>>> 2. Apple stopped including svn with the current OS (10.15.x) and >>>>>>>>>>>> its developer tools >>>>>>>>>>>> >>>>>>>>>>>> I don't know if anyone else has run into this yet, but it could be >>>>>>>>>>>> an increasingly sticky issue going forward. Unless there are plans >>>>>>>>>>>> to change how g.extension gets packages, I suppose I need to >>>>>>>>>>>> include it in the Mac app bundle. >>>>>>>>>>>> >>>>>>>>>>>> Has anyone else hit this yet? >>>>>>>>>>>> >>>>>>>>>>>> Michael >>>>>>>>>>>> ____________________ >>>>>>>>>>>> C. Michael Barton >>>>>>>>>>>> Director, Center for Social Dynamics & Complexity >>>>>>>>>>>> Director, Network for Computational Modeling in Social & >>>>>>>>>>>> Ecological Sciences >>>>>>>>>>>> Professor of Anthropology, School of Human Evolution & Social >>>>>>>>>>>> Change >>>>>>>>>>>> Head, Graduate Faculty in Complex Adaptive Systems Science >>>>>>>>>>>> Arizona State University >>>>>>>>>>>> >>>>>>>>>>>> voice: 480-965-6262 (SHESC), 480-965-8130/727-9746 (CSDC) >>>>>>>>>>>> fax: 480-965-7671 (SHESC), 480-727-0709 (CSDC) >>>>>>>>>>>> www: 'http://www.public.asu.edu/~cmbarton >>>>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.public.asu.edu_-7Ecmbarton&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=wLo54OaOggTCfa9dMnza-vU7d8tllnb8G9z7MW3tF38&e=>, >>>>>>>>>>>> https://complexity.asu.edu/csdc' >>>>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__complexity.asu.edu_csdc-27&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=esHRRZODAbgeKk6vYVpJkYSszGdc2vYZgvM7W5jtUjk&s=-cLS2YOXOnAMIbnQqtJQAbmXsjh9CVUVr2PzI6yj6FE&e=> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>> grass-dev mailing list >>>>>>>>>>>> grass-dev@lists.osgeo.org <mailto:grass-dev@lists.osgeo.org> >>>>>>>>>>>> https://lists.osgeo.org/mailman/listinfo/grass-dev >>>>>>>>>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__lists.osgeo.org_mailman_listinfo_grass-2Ddev&d=DwMFaQ&c=l45AxH-kUV29SRQusp9vYR0n1GycN4_2jInuKy6zbqQ&r=lk-7X7CEOMDN8GaGVhiDsuO6gEp1wbG6nfT1XEEEtR0&m=3OtUJxnVDVfConnURZzc-TyoKzTbZWrxoF7zL8E2qZ0&s=4UVbmUdiztW2twuvUPIEUWiez0RLGyHRTdL0TV5DVfw&e=> >>>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> >
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