Ahoy Skipper ;) Can you compile the ATLAS lib locally? And then use the install script. My solution was to always use standard directories.
See also that the .so files are symbolic links to the .so.3.2.1 libs. It seems that you are missing a dependency. The FFTW3 is missing. Here is my listing of libraries: helio(a)linux-techno:/usr/lib64> l *lapack* -rw-r--r-- 1 root root 20018986 Jul 5 2010 liblapack.a -rw-r--r-- 1 root root 20302074 Jul 5 2010 liblapack_pic.a lrwxrwxrwx 1 root root 18 Out 4 2010 liblapack.so -> liblapack.so.3.2.1* lrwxrwxrwx 1 root root 18 Out 4 2010 liblapack.so.3 -> liblapack.so.3.2.1* -rwxr-xr-x 1 root root 5308064 Jul 5 2010 liblapack.so.3.2.1* helio(a)linux-techno:/usr/lib64> l *blas* -rw-r--r-- 1 root root 1471064 Jul 5 2010 libblas.a -rw-r--r-- 1 root root 1477384 Jul 5 2010 libblas_pic.a lrwxrwxrwx 1 root root 16 Out 4 2010 libblas.so -> libblas.so.3.2.1* lrwxrwxrwx 1 root root 16 Out 4 2010 libblas.so.3 -> libblas.so.3.2.1* -rwxr-xr-x 1 root root 362648 Jul 5 2010 libblas.so.3.2.1* lrwxrwxrwx 1 root root 20 Out 4 2010 libgslcblas.so.0 -> libgslcblas.so.0.0.0* -rwxr-xr-x 1 root root 215120 Jul 5 2010 libgslcblas.so.0.0.0* lrwxrwxrwx 1 root root 16 Out 4 2010 liblash.so.2 -> liblash.so.2.0.0* -rwxr-xr-x 1 root root 52392 Jul 5 2010 liblash.so.2.0.0* helio(a)linux-techno:/usr/lib64> l *fftw* lrwxrwxrwx 1 root root 18 Out 4 2010 libfftw3f.so -> libfftw3f.so.3.2.4* lrwxrwxrwx 1 root root 18 Out 4 2010 libfftw3f.so.3 -> libfftw3f.so.3.2.4* -rwxr-xr-x 1 root root 1019824 Jul 5 2010 libfftw3f.so.3.2.4* lrwxrwxrwx 1 root root 26 Out 4 2010 libfftw3f_threads.so.3 -> libfftw3f_threads.so.3.2.4* -rwxr-xr-x 1 root root 27168 Jul 5 2010 libfftw3f_threads.so.3.2.4* lrwxrwxrwx 1 root root 17 Out 4 2010 libfftw3.so -> libfftw3.so.3.2.4* lrwxrwxrwx 1 root root 17 Out 4 2010 libfftw3.so.3 -> libfftw3.so.3.2.4* -rwxr-xr-x 1 root root 1048488 Jul 5 2010 libfftw3.so.3.2.4* lrwxrwxrwx 1 root root 25 Out 4 2010 libfftw3_threads.so.3 -> libfftw3_threads.so.3.2.4* -rwxr-xr-x 1 root root 27160 Jul 5 2010 libfftw3_threads.so.3.2.4* helio(a)linux-techno:/usr/lib64> Hope it helped. (my Linux is OpenSUSE and I am having trouble with gtk/glib, gretl_x11 crashes :( ) Hélio On Thu, Aug 18, 2011 at 9:43 PM, Skipper Seabold <jsseabold(a)gmail.com>wrote: > Hi, > > Trying to install gretl 1.9.5 from source due to the known seg faults > in the downstream ubuntu 11.04 repositories. I have all the > dependencies installed, except my lapack (3.2.2) was built with ATLAS > (3.9.2) with the same version of gcc I have installed. The lapack > stuff seems to be giving me troubles, though I'm not too sure why. It > works fine for numpy/scipy and R. > > |2 $ pwd > /home/skipper/built/atlas_files > > |3 $ ls lib/ > libamd.2.2.1.a libcblas.a liblapack.a libptf77blas.a > libamd.a libcblas.so liblapack.so libptf77blas.so > libatlas.a libf77blas.a libptcblas.a libumfpack.5.5.0.a > libatlas.so libf77blas.so libptcblas.so libumfpack.a > > So I change lblas to lcblas in configure. This is my config.log > > http://pastebin.com/3GR4yCH6 > > Any ideas? > > Skipper > _______________________________________________ > Gretl-users mailing list > Gretl-users(a)lists.wfu.edu > http://lists.wfu.edu/mailman/listinfo/gretl-users >Ahoy Skipper ;)
Can you compile the ATLAS lib locally? And then use the install script. My solution was to always use standard directories.
See also that the .so files are symbolic links to the .so.3.2.1 libs.
It seems that you are missing a dependency. The FFTW3 is missing.
Here is my listing of libraries:
helio@linux-techno:/usr/lib64> l *lapack*
-rw-r--r-- 1 root root 20018986 Jul  5  2010 liblapack.a
-rw-r--r-- 1 root root 20302074 Jul  5  2010 liblapack_pic.a
lrwxrwxrwx 1 root root    18 Out  4  2010 liblapack.so -> liblapack.so.3.2.1*
lrwxrwxrwx 1 root root    18 Out  4  2010 liblapack.so.3 -> liblapack.so.3.2.1*
-rwxr-xr-x 1 root root  5308064 Jul  5  2010 liblapack.so.3.2.1*
helio@linux-techno:/usr/lib64> l *blas*
-rw-r--r-- 1 root root 1471064 Jul  5  2010 libblas.a
-rw-r--r-- 1 root root 1477384 Jul  5  2010 libblas_pic.a
lrwxrwxrwx 1 root root    16 Out  4  2010 libblas.so -> libblas.so.3.2.1*
lrwxrwxrwx 1 root root    16 Out  4  2010 libblas.so.3 -> libblas.so.3.2.1*
-rwxr-xr-x 1 root root  362648 Jul  5  2010 libblas.so.3.2.1*
lrwxrwxrwx 1 root root    20 Out  4  2010 libgslcblas.so.0 -> libgslcblas.so.0.0.0*
-rwxr-xr-x 1 root root  215120 Jul  5  2010 libgslcblas.so.0.0.0*
lrwxrwxrwx 1 root root    16 Out  4  2010 liblash.so.2 -> liblash.so.2.0.0*
-rwxr-xr-x 1 root root  52392 Jul  5  2010 liblash.so.2.0.0*
helio@linux-techno:/usr/lib64> l *fftw*
lrwxrwxrwx 1 root root    18 Out  4  2010 libfftw3f.so -> libfftw3f.so.3.2.4*
lrwxrwxrwx 1 root root    18 Out  4  2010 libfftw3f.so.3 -> libfftw3f.so.3.2.4*
-rwxr-xr-x 1 root root 1019824 Jul  5  2010 libfftw3f.so.3.2.4*
lrwxrwxrwx 1 root root    26 Out  4  2010 libfftw3f_threads.so.3 -> libfftw3f_threads.so.3.2.4*
-rwxr-xr-x 1 root root  27168 Jul  5  2010 libfftw3f_threads.so.3.2.4*
lrwxrwxrwx 1 root root    17 Out  4  2010 libfftw3.so -> libfftw3.so.3.2.4*
lrwxrwxrwx 1 root root    17 Out  4  2010 libfftw3.so.3 -> libfftw3.so.3.2.4*
-rwxr-xr-x 1 root root 1048488 Jul  5  2010 libfftw3.so.3.2.4*
lrwxrwxrwx 1 root root    25 Out  4  2010 libfftw3_threads.so.3 -> libfftw3_threads.so.3.2.4*
-rwxr-xr-x 1 root root  27160 Jul  5  2010 libfftw3_threads.so.3.2.4*
helio@linux-techno:/usr/lib64>Â
Hope it helped.
(my Linux is OpenSUSE and I am having trouble with gtk/glib, gretl_x11 crashes :( )
Hélio
On Thu, Aug 18, 2011 at 9:43 PM, Skipper Seabold <jsseab...@gmail.com> wrote:
Hi,
Trying to install gretl 1.9.5 from source due to the known seg faults
in the downstream ubuntu 11.04 repositories. I have all the
dependencies installed, except my lapack (3.2.2) was built with ATLAS
(3.9.2) with the same version of gcc I have installed. The lapack
stuff seems to be giving me troubles, though I'm not too sure why. It
works fine for numpy/scipy and R.
|2 $ pwd
/home/skipper/built/atlas_files
|3 $ ls lib/
libamd.2.2.1.a  libcblas.a   liblapack.a   libptf77blas.a
libamd.a     libcblas.so   liblapack.so  libptf77blas.so
libatlas.a    libf77blas.a  libptcblas.a  libumfpack.5.5.0.a
libatlas.so   libf77blas.so  libptcblas.so  libumfpack.a
So I change lblas to lcblas in configure. This is my config.log
http://pastebin.com/3GR4yCH6
Any ideas?
Skipper
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