Dear Gromacs users, I am using Gromacs in a computer cluster using many processors (currently 228). Sometimes I get the following assertion error:
*Assertion `timerq->cursor <= current_time' failed at mxm/util/timerq.c:91* This error presents at some time inside of the simulation, every run at a different time, sometimes not at all, and is more frequent the more processors I try to use. The command I am using is: *mdrun_plumed -quiet -pd -s q60Bemd.tpr -o q60Bemd.trr -e q60Bemd.edr -g > q60Bemd.log -c q60Bemd.gro -cpi state.cpt -multi 6 -replex 12500 -plumed > plumed -maxh 7.5* Do you recognize the error? Any help will be appreciated. Thank you for your help. Yours, A. Gomez-Sicilia Protein nanomechanics lab Cajal Institute - CSIC Avda. Doctor Arce, 37 28002 Madrid (Spain) Phone number: (+34) 91-585.47.44 Fax number: (+34) 91-585.47.54 E-mail: agomezsici...@cajal.csic.es -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
