On 12/24/13, 2:38 AM, rbbioinfo wrote:
Hi, I want to plot the total displacement of an atom/ion along Z axis with
respect to time. Anybody kindly help me regarding how to calculate the
movement of any atom using gromacs. An early response will be highly
appreciated.


Sounds like a job for g_traj.

-Justin

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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441

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