On 12/28/13, 7:45 AM, Andrew Bostick wrote:
Hi all I have a general question. In the MD simulation of lipid bilayers in papers, almost, most of the parameters calculated by gromacs is symmetric between top and bottom leaflet of bilayer. Is this symmetry obligatory?
No, it is not obligatory.
If in my case, for example density is not symmetry, is there problem?
Not necessarily. You'll have to define what is asymmetric, though - the number of lipids or their type?
-Justin -- ================================================== Justin A. Lemkul, Ph.D. Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 601 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
