Dear GMX-Users,
For understanding the aggregation propensity of the
peptide I did a 1 us md simulation with periodic boundary. I defined a
triclinic box around my peptide using editconf. The command I used is the
following
editconf -f tau_pep.gro -bt triclinic -d 1.1 -princ -o box.gro.
Here -d 1.1 make any problems in the simulation?Is the value is
appropriate?
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