On 2/23/14, 11:32 AM, Marcelo Depólo wrote:
Maybe I should explain it better.
I am using "*mpirun -np 24 mdrun -s prt.tpr -e prt.edr -o prt.trr*", pretty
much a standard line. This job in a batch creates the outputs and, after
some (random) time, a back up is done and new files are written, but the
job itself do not finish.
It would help if you can post the .log file from one of the runs to see the
information regarding mdrun's parallel capabilities. This still sounds like a
case of an incorrectly compiled binary. Do other runs with the same binary
produce the same problem?
-Justin
2014-02-23 17:12 GMT+01:00 Justin Lemkul <jalem...@vt.edu>:
On 2/23/14, 11:00 AM, Marcelo Depólo wrote:
But it is not quite happening simultaneously, Justin.
It is producing one after another and, consequently, backing up the files.
You'll have to provide the exact commands you're issuing. Likely you're
leaving the output names to the default, which causes them to be backed up
rather than overwritten.
-Justin
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul
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