Hi Justin The bilayer is full solvated. It has 128 ceramide and 5120 water molecules (40 water molecule per ceramide).
I ran same simulation on my desktop machine it is working properly, properties such as potential energy and area per lipid converse very nicely. Is there any problem with server or running on multiple thread. -- View this message in context: http://gromacs.5086.x6.nabble.com/difference-in-potenital-energy-on-desktop-and-server-run-tp5014813p5014839.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
