Hello THOMMAS, Exactly, it showed 2.2GB of trajectory is going to be created. But i have 17GB of free space on my cluster on which i am running. So any other reasons for the error. Thanks in advance.
On Tue, Mar 4, 2014 at 8:00 PM, MUSYOKA THOMMAS < mutemibiochemis...@gmail.com> wrote: > Hi Pavan, > When you use the grompp command to prepare the md.tpr file for the final > mdrun, do you notice such a statement "This run will generate roughly XXXXX > Mb of data". I suspect the resultant trajectory could be exceeding the > available space. > > > On Tue, Mar 4, 2014 at 4:12 PM, Pavan Kumar <kumar.pavan...@gmail.com > >wrote: > > > Hi everybody, > > I am running mdrun_mpi V 4.6.5 for nsteps=10000000; 20 ns > > My simulation is getting stopped at 500ps and I am getting following > error > > even though i have enough space on my cluster around 17 GB. > > > > *Cannot fsync 'md1.trr'; maybe you are out of disk space?* > > *Cannot fsync 'md1.log'; maybe you are out of disk space?* > > > > > > I have executed for two times, each time i get different error. > > > > What is the reason for the above error. I am sharing my mdp file. > > Any help is appreciated. > > -- > > Thanks & Regards, > > Pavan Kumar > > Project Engineer > > CDAC -KP > > Ph +91-7676367646 > > > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Thanks & Regards, Pavan Kumar -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.