Hi, As far as I know, trjcat -f 1.xtc 2.xtc -o combined.xtc is enough to concatenate two xtc files. No need to give any extra options (-cat or -settime).
On Mon, Apr 21, 2014 at 11:02 AM, sunita gupta <sunita....@gmail.com> wrote: > Hello Everyone, > > > I have two trajectories of 40 ns each, the first one is from 0 to 40 ns and > next one is extended to next 40 ns taking .cpt file of the first > I concatenating the two using two commands: > 1. trjcat -f 1st.xtc 2nd.xtc -o combine1.xtc -cat > 2. trjcat -f 1st.xtc 2nd.xtc -o combine2.xtc -settime (selecting 0.000 ps > for 1st and 40000 ps for 2nd) > > But when I plotted the rmsd using combine1.xtc and combine2.xtc I am > getting very strange plots > > Unfortunately I am not able to post the plots as its saying msg is too big > to be posted and bouncing back... > Can anyone suggest me whats wrong with this method. > > > > > > Best Regards > -- > SUNITA GUPTA > Senior Research Fellow > Bioinformatics Centre > Jawaharlal Nehru University > New Delhi- 110067 > Email- sunita....@gmail.com > > > > > > -- > -- > SUNITA GUPTA > Senior Research Fellow > Bioinformatics Centre > Jawaharlal Nehru University > New Delhi- 110067 > Email- sunita....@gmail.com > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- With Best Wishes Venkat Reddy Chirasani PhD student Laboratory of Computational Biophysics Department of Biotechnology IIT Madras Chennai INDIA-600036 -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
