Thanks for quick reply Mark...what information you are asking for?Should I search for this my .mdp file??
Thanks Lovika On Sat, May 17, 2014 at 11:35 AM, Mark Abraham <mark.j.abra...@gmail.com>wrote: > Your simulation seems too small to parallelize in the way you/mdrun tried. > But we need more information to be sure. > > Mark > On May 17, 2014 7:33 AM, "Lovika Moudgil" <lovikamoud...@gmail.com> wrote: > > > Hi Everyone .... > > I need some help. With my mdrun command I am getting this following error > > . > > > > Program mdrun, VERSION 4.6.5 > > Source code file: > > /home/itlab/Documents/gromacs/gromacs-4.6.5/src/mdlib/domdec_con.c, line: > > 722 > > > > Fatal error: > > DD cell 0 0 1 could only obtain 1 of the 2 atoms that are connected via > > constraints from the neighboring cells. This probably means your > constraint > > lengths are too long compared to the domain decomposition cell size. > > Decrease the number of domain decomposition grid cells or lincs-order. > > For more information and tips for troubleshooting, please check the > GROMACS > > website at http://www.gromacs.org/Documentation/Errors > > ------------------------------------------------------- > > > > Please help me to understand this error.What this error is all about ? > > Where should I search to resolve this error ? > > > > Thanks > > Lovika > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.