Dear Justin, Thank you for the reply. I was using my 50 ns trajectory for generating the .xpm and .eps files. But when I tried the first 200 ps trajectory, I can see a clear image with helical content. I was wondering how to solve this because I have to use the whole 50 ns .tpr and .trr files. Please suggest me.
Thanking you, Regards Aditya. On Wed, May 21, 2014 at 5:32 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 5/21/14, 7:56 AM, Aditya Padhi wrote: > >> Dear Gromacs users, >> When I am using the DSSP program to generate the secondary >> structure changes of my protein (23 amino acids) and its mainchain, I am >> getting the results in the form of .eps file and using Ghostview, I >> visualized and saved in .jpeg format. But the figure looks blurred and I >> can not clearly see any secondary structure changes. Can anyone suggest me >> what and where I am doing the mistake and the possible solutions for this. >> I am attaching the figure with this mail for your reference. >> >> > The list does not accept attachments. If you want to supply an image, > upload it to a file-sharing server. > > If the image is simply distorted, that's where .m2p files are useful to > alter the size properties of the matrix. > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Ruth L. Kirschstein NRSA Postdoctoral Fellow > > Department of Pharmaceutical Sciences > School of Pharmacy > Health Sciences Facility II, Room 601 > University of Maryland, Baltimore > 20 Penn St. > Baltimore, MD 21201 > > jalem...@outerbanks.umaryland.edu | (410) 706-7441 > http://mackerell.umaryland.edu/~jalemkul > > ================================================== > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- ******************************************** Aditya Kumar Padhi Ph.D Scholar School of Biological Sciences (SBS) Indian Institute of Technology Delhi New Delhi-110016, India Contact no:+91-9711539958 ******************************************** -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.