hi all, I'm trying to do a simulation of a membrane protein in DPPC, with Gromacs4.6. I used gromos96 53a6 as forcefield. I'm following KALP15 tutorial of gromacs. I'm trying to orient protein in membrane but I can't with editconf because I don't know what parameters I had to use as center of mass. I've tried to move the membrane in the correct orientation with vmd but when I do the energy minimization, the membrane change position. how to fix it? thank you for help -- Gromacs Users mailing list
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