hello every one now i am in trjconv -s em.tpr -f dppc128.gro -o dppc128_whole.gro -pbc mol -ur compact
this command but in out put they are asking Will write gro: Coordinate file in Gromos-87 format Reading file em.tpr, VERSION 4.5.5 (single precision) Reading file em.tpr, VERSION 4.5.5 (single precision) Select group for output Group 0 ( System) has 14036 elements Group 1 ( Other) has 6656 elements Group 2 ( POPC) has 6656 elements Group 3 ( Water) has 7380 elements Group 4 ( SOL) has 7380 elements Group 5 ( non-Water) has 6656 elements i am unable to understand which group to select is this command is ok or i have to use set of command to center or jump the ligand kindly help -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
