Dear Manu Vajpai, On 07 Jul 2014, at 07:39, Manu Vajpai <manuvaj...@gmail.com> wrote:
> Hi all, > > I am interested in using accelerated MD or another method which allows me > to sample rare events without specifying collective variables beforehand. > The only solution that I have found for GROMACS so far is conformational > flooding, but I can't find a reference for its implementation in any > GROMACS version since 3.3. Is there any alternative method/implementation > which will allow me to reliably perform such simulations in GROMACS? You can use flooding in Gromacs 3.x, 4.x and 5 - it’s still there :) Carsten > > Regards, > Manu Vajpai, > PhD Candidate, > IIT Kanpur > India > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to gmx-users-requ...@gromacs.org. -- Dr. Carsten Kutzner Max Planck Institute for Biophysical Chemistry Theoretical and Computational Biophysics Am Fassberg 11, 37077 Goettingen, Germany Tel. +49-551-2012313, Fax: +49-551-2012302 http://www.mpibpc.mpg.de/grubmueller/kutzner http://www.mpibpc.mpg.de/grubmueller/sppexa -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
