Dear Teemu, I have been following one of your presentations on "Improved Gromacs analysis using dynamic selections" and also referring your publication on LDL modeling and dynamics. My simulation system is quite similar to your LDL model. In your presentation I came across the following dynamic selection.
underprot = insolidangle center com of lipids span group "Protein" cutoff 5; I know the purpose of the above statement but I didn't get the meaning of some of the words, like "insolidangle" and "cutoff=5". If don't mind, can you please explain this statement? There are some useful tools for spherical systems like g_jumpdist, g_rdf (modified)....etc that you explained in your presentation. Do you have any modified gromacs copy with the inclusion of these tools. Because these tools are very important for my system. Sorry for such a lengthy mail. Thank you for your time and concern Venkat -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
