I'd guess your permissions on some part of /users/yli/gromacs-5.0/exec/bin/gmx_mpi are such that you can't access.
Mark On Thu, Aug 28, 2014 at 4:06 AM, 朱文鹏 <jasonzhu...@gmail.com> wrote: > Dear all, > > I am trying to install gromacs 5.0 by cmake on my cluster. But an error > occurs when I "make install". > > The "module list" for environment is given as below: > mvapich2/2.0rc1-intel > cmake/2.8.12.2 > intel/2013.1.106 > fftw/3.3.2 > > And the sequence of commands to execute is: > ------------------------------------------------------- > cmake ../ \ > -DCMAKE_C_COMPILER=mpicc \ > -DCMAKE_CXX_COMPILER=mpicxx \ > -DGMX_X11=OFF \ > -DGMX_MPI=ON \ > -DCMAKE_INSTALL_PREFIX=/users/yli/gromacs-5.0/exec \ > -DCMAKE_INCLUDE_PATH=/gpfs/runtime/opt/fftw/3.3.2/include \ > -DCMAKE_LIBRARY_PATH=/gpfs/runtime/opt/fftw/3.3.2/lib/libfftw3f.a > > make > > make install > ------------------------------------------------------- > > Configuration and "make" finished successfully. There are no errors or > warnings on the first two steps. However, an error shows up at the final > step of "make install" as below: > --------------------------- > .......... > -- Up-to-date: > > /users/yli/gromacs-5.0/exec/include/gromacs/trajectoryanalysis/analysismodule.h > -- Up-to-date: > > /users/yli/gromacs-5.0/exec/include/gromacs/trajectoryanalysis/analysissettings.h > -- Up-to-date: > > /users/yli/gromacs-5.0/exec/include/gromacs/trajectoryanalysis/cmdlinerunner.h > CMake Error at src/programs/cmake_install.cmake:42 (FILE): > file INSTALL cannot find "/users/yli/gromacs-5.0/exec/bin/gmx_mpi". > Call Stack (most recent call first): > src/cmake_install.cmake:40 (INCLUDE) > cmake_install.cmake:49 (INCLUDE) > > > make: *** [install] Error 1 > --------------------------- > > And the executable file "gmx_mpi" cannot be found anywhere. It is the first > time I install the version 5.0. The same installation and environments work > for the version 4.6.5. I am wondering if anyone has the same problems when > installing gromacs 5.0. I would appreciate it if you have any suggestion to > my installation. > > Thank you very much. > > Best, > Jason > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.