There are a few review article where the strategy and guidelines are described. You can find this material on the cgmartini.nl website.
> On Aug 29, 2014, at 2:03, Sridhar Kumar Kannam <srisri...@gmail.com> wrote: > > Dear Gromacs users, > > I have very recently started working with Gromacs and Martini force field. > I am able to generate the coarse-grained model for HIV Protease (1hvr.pdb). > I want to simulate the protein along with its inhibitor. Are there any > guidelines for building (coarse-graining) its inhibitor ? > > Sorry for the naive question ... > > Thank you. > > > > > > > -- > Cheers !!! > Sridhar Kumar Kannam :) > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
