Hello:
I am trying to use the following command in Gromacs-5.0.1:
mpirun -np 2 mdrun_mpi -v -s npt2.tpr -c npt2.gro -x npt2.xtc -g
npt2.log -gpu_id 01 -ntomp 10
but it always failed with messages:
2 GPUs detected on host cudaB:
#0: NVIDIA GeForce GTX 780 Ti, compute cap.: 3.5, ECC: no, stat:
compatible
#1: NVIDIA GeForce GTX 780 Ti, compute cap.: 3.5, ECC: no, stat:
compatible
2 GPUs user-selected for this run.
Mapping of GPUs to the 1 PP rank in this node: #0, #1
-------------------------------------------------------
Program mdrun_mpi, VERSION 5.0.1
Source code file:
/soft2/plumed-2.2/gromacs-5.0.1/src/gromacs/gmxlib/gmx_detect_hardware.c, line:
359
Fatal error:
Incorrect launch configuration: mismatching number of PP MPI processes
and GPUs per node.
mdrun_mpi was started with 1 PP MPI process per node, but you provided 2
GPUs.
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
However, this command works fine in Gromacs-4.6.5, and I don't know why
it failed in 5.0.1. Does anybody have any idea?
thx a lot
Albert
--
Gromacs Users mailing list
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a
mail to gmx-users-requ...@gromacs.org.