Hi, Maybe this is not a directly related Gromacs question, but:
I have performed a md simulation of a protein in water, and I want to follow for certain amino acids exposure to solvent and nearby contacting residues. Does anyone know a program for drawing synthetic 2D diagrams of interactions/contacts between a residue and its spatial neighbors from an PDB file? Many thanks, Andrei *Dr. Andrei Neamtu, PhD, Lecturer Department of Physiology "Gr. T. Popa" University of Medicine and Pharmacy of Iasi http://www.umfiasi.ro/ <http://www.umfiasi.ro/> Str. Universitatii nr. 16 IASI, Jud. Iasi ROMANIA* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
