Hello, I am calculating Mg2+ concentration dependent persistence length calculation of RNA strands. Since, the trends of RNA chain collapse is different for different ionic concentration, I need to quantify if there is overcharging at higher concentration of divalent cation. For this, I have to show a charge density distribution against the distance of the RNA at different salt concentration. I am using GROMACS 4.5.6 and could not find this particular tool. Kindly help me as its one of the reviews from the referee.
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