On 9/11/14 1:51 PM, shahab shariati wrote:
Dear Justin Very thanks for your answer. Unfortunately, I am beginner in MD simulation of bilayer membrane systems. Based on your answer (You can try the translation options of trjconv in conjunction with -pbc mol), should I use following command? trjconv –trans –pbc mol
The -trans option takes a vector where you specify the amount of translation to apply. See trjconv -h.
-Justin
trjconv –pbc nojump Best wishes
-- ================================================== Justin A. Lemkul, Ph.D. Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 601 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 http://mackerell.umaryland.edu/~jalemkul ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
