Yes .xvg output file got generated without errors. Kindly see to it if the command mentioned in my previous mail is correct for getting the residue-residue contact of protein complexes. Also as i mentioned that why am i not getting the log file generated even after giving the -g hbond.log?
On Fri, Sep 12, 2014 at 5:41 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 9/12/14 6:11 AM, Namita Singh wrote: > >> i nwant to generate a log file for residue residue contact of a >> protein-protein complex.I am using >> >> g_hbond -s a.tpr -f c.xtc -r 0.55 -num hbond.xvg -g hbond.log -n >> atom_index.ndx -contact >> bt i am not getting any log file. >> >> > Do you get the other output files? Is there any error? > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Ruth L. Kirschstein NRSA Postdoctoral Fellow > > Department of Pharmaceutical Sciences > School of Pharmacy > Health Sciences Facility II, Room 601 > University of Maryland, Baltimore > 20 Penn St. > Baltimore, MD 21201 > > jalem...@outerbanks.umaryland.edu | (410) 706-7441 > http://mackerell.umaryland.edu/~jalemkul > > ================================================== > > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.