thank you for replay when i want to download this file and i click on it its nothing happend and just the text page opend and its nothing to download.
Sent from my iPad > On Sep 26, 2014, at 19:56, Justin Lemkul <[email protected]> wrote: > > > >> On 9/26/14 12:23 PM, Yaser Hosseini wrote: >> hi gromacs user >> >> i have problem with grompp command in gromacs i cant find .mdp files >> and i cant pass step 4 in this tutorial: >> >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme_old/04_ions.html >> >> im new in gromacs please help me to find a way to fix my problems. > > I already told you this yesterday - the tutorial gives you the file to > download. On that page, note the section: > > "An .mdp file is normally used to run energy minimization or an MD > simulation, but in this case is simply used to generate an atomic description > of the system. An example .mdp file (the one we will use) can be downloaded > here." > > Note that the word "here" is a link from which you can download the file. If > you're not familiar with file downloads, text files, or examining/editing > their content, you should probably stop with tutorial material and consider > some Linux basics in terms of file management before attempting to do > something complex like MD simulations. > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Ruth L. Kirschstein NRSA Postdoctoral Fellow > > Department of Pharmaceutical Sciences > School of Pharmacy > Health Sciences Facility II, Room 601 > University of Maryland, Baltimore > 20 Penn St. > Baltimore, MD 21201 > > [email protected] | (410) 706-7441 > http://mackerell.umaryland.edu/~jalemkul > > ================================================== > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to [email protected]. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
