Hi, The output does drop in frequency at some point, so that might be all you are seeing. Experiment with -b and values around the putative problem area.
Mark On Oct 26, 2014 6:59 PM, "Eric Smoll" <ericsm...@gmail.com> wrote: > Hello Gromacs users, > > I have a trajectory file script18_o.trr that I am trying to process. Using > gmxcheck, this file appears to be complete. When I execute the command > below > > trjconv -f ../script18/script18_o.trr -s ../script17/script17_o.tpr -o > tmp1.trr -pbc whole << EOF > 0 > EOF > > the code moves quickly through the first few hundred frames only to > consistently get stuck on frame 300... > > trn version: GMX_trn_file (single precision) > -> frame 320 time 128.000 -> frame 300 time 120.000 > > How do I troubleshoot the problem? > > -Eric > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.