Hi Adriana, By default, with martinize, the elastic network will be applied to each chain separately. You'll need to explicitly merge chains to have a network between two chains. So you should be fine following the tutorial like that.
Best, Tsjerk On Tue, Oct 28, 2014 at 3:01 PM, Adriana Garro <adrianagarr...@gmail.com> wrote: > Dear Gromacs users, > > I am interested in apply Martini + Elnedyn to my system so I followed the > tutorial: > > http://md.chem.rug.nl/cgmartini/index.php/proteins#elnedyn > > and it works well, now I am using the same script provided by the tutorial > but as my system is different (I am trying to use TMD as well) I would > need to perform some modifications, for example I dont want elastic > network between the 2 molecules because they are not different chains of > the same macromolecule like in the tutorial so my question is: is it > possible to use in the same box 2 differents networks one to each molecule? > Can someone suggest some tutorial or paper related to this topic? > Thanks in advance. > Best, > > Adriana > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Tsjerk A. Wassenaar, Ph.D. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.