hello
my name is hans, i am a master student in biophysics at the lmu munich.
first thanks a lot to all spending time to engage with my problem.
my machine is configured as follows.
processor intel i5 2450M 2,5 Ghz
OS windows 7 64 bit
linux emulation with cygwin x86_64 version 1.7.32
gromacs version is 5.0.2
i installed cygwin with the following packages beside the defaults. devel (gdn,
gdb, make, cmake, gcc 4.9.0.1), shels(tcsh), editors (vi), lib(libxml2-devel
2.9.2.1, libboost,libgcc1 4.9.0.1)
i have uninstalled the default fftw3 package from cygwin as recommended in the
gromacs instruction.
i unpacked gromacs in my default cygwin user folder = /home/gl/
the configuration and compiling shell script i used was
cd gromacs-5.0.2
mkdir build
cd build
cmake .. -DGMX_BUILD_OWN_FFTW=ON -DGMX_EXTERNAL_BLAS=OFF
-DGMX_EXTERNAL_LAPACK=OFF -DGMX_SIMD=SSE2 -DREGRESSIONTEST_DOWNLOAD=ON
make
make check
i tried it several times with different cmake options with and without
DGMX_EXTERNAL_BLAS=OFF -DGMX_EXTERNAL_LAPACK=OFF,
with and without -DGMX_BUILD_OWN_FFTW=ON (if i did without this option i
install the newest fftw3 version (3.0.2) before.
but the result was always the same
the configuration and the compilation works without any warning.
but the testing provides a lot of errors and always the same result
as shown in the test logs. i attached them to this email.
i hope someone can help me.
thanks and best regards
hans
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