Dear gromacs users I have been tried to simulate the protein-dna complex. I got error as "Atom P in residue DC 3 was not found in the rtp entry DC5 with 28 atoms while sorting atom" upon using the command pdb2gmx. I have been added the P atom and bonds of P in the .rtp file which is the part of AMBER99SB-ILDN force field. After the modification of the dna.rtp file I also got the same error which mentioned above. Kindly tell me how to overcome this error.
Thanks in advance Surya Graduate Student, India. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
