Dear Users Dr.Szilard : I searched in the web regarding the correct syntax and as you wrote in the last mail , ran it again.
The generated log file is huge. 260 MB. So I am sending a Google Drive link. If possible kindly check and suggest further. ---------- Forwarded message ---------- From: "Szilárd Páll" <[email protected]> To: Discussion list for GROMACS users <[email protected]> Cc: Discussion list for GROMACS users < [email protected]> Date: Sun, 9 Nov 2014 23:16:23 +0100 Subject: Re: [gmx-users] Installing GROMACS 4.6.7 on Intel Cluster On Sun, Nov 9, 2014 at 9:17 PM, Szilárd Páll <[email protected]> wrote: > That looks like it could actually be a compiler/linker or cmake crash. > Could you run: > $ make > and then > $ make install VERBOSE=1 2&1 | tee make-install.out There is a typo in the above command! Here's the correct version: $ make install VERBOSE=1 2>&1 | tee make-install.out > and share the resulting make-install.out file (use pastebin or similar). > > Cheers, > -- > Szilárd > > > On Sun, Nov 9, 2014 at 8:21 PM, Agnivo Gosai <[email protected]> wrote: >> Dear Users >> >> I have tried installing both versions 4.6.5 and 4.6.7 in the Intel cluster >> at my university. I have tried with both Intel compilers as well as GNU >> compilers. During installation I have checked that Cmake is automatically >> detecting Openmp and AVX 256. >> >> Also , I keep -DGMX_BUILD_OWN_FFTW=ON. However , still at the last step of >> make install I am getting the following error :- >> >> terminate called after throwing an instance of 'std::bad_alloc' >> what(): std::bad_alloc >> make: *** [install] Aborted >> >> I searched in the web but could not find such an error associated with >> GROMACS installation. >> >> Then I separately tried installing "mdrun" only from version 4.6.5 and I >> could do that. I also checked that it operates as follows :- ./mdrun. >> >> However I need to install the full package. >> >> Kindly help with suggestions. make-install.out <https://docs.google.com/file/d/0B-U8uULVZjfRWWhWTDY3cU1LSEk/edit?usp=drive_web> Thanks & Regards Agnivo Gosai Grad Student, Iowa State University. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
