the directory where i execute the command is in desktop. i think that folder doesnt need write/read permission. i even have used sudo -s mode, still the problem exist. On Dec 31, 2014 11:39 PM, "Justin Lemkul" <jalem...@vt.edu> wrote:
> > > On 12/31/14 10:53 AM, Nizar Masbukhin wrote: > >> hi gromacs user, >> >> when i try to compute secondary structure using do_dssp program, the error >> message appear: >> >> "Program do_dssp_mpi, VERSION 5.0.2 >> Source code file: /home/user/gromacs-5.0.2/src/gromacs/fileio/futil.cpp, >> line: 863 >> >> Fatal error: >> Permission denied for opening ddhCTh1r >> For more information and tips for troubleshooting, please check the >> GROMACS >> website at http://www.gromacs.org/Documentation/Errors" >> >> i have installed dssp program, and i have set the environment DSSP to the >> path where i install DSSP. >> >> could anyone please explain to me whats wrong? >> >> > You don't have write permission in the directory where you are executing > your command. > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Ruth L. Kirschstein NRSA Postdoctoral Fellow > > Department of Pharmaceutical Sciences > School of Pharmacy > Health Sciences Facility II, Room 629 > University of Maryland, Baltimore > 20 Penn St. > Baltimore, MD 21201 > > jalem...@outerbanks.umaryland.edu | (410) 706-7441 > http://mackerell.umaryland.edu/~jalemkul > > ================================================== > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.