On 2/16/15 9:49 PM, Aarti rana wrote:
After issuing command as you asked:
echo $DSSP
/usr/local/bin/dssp
And yes I downloaded the "dssp-2.0.4-linux-amd64
<ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.0.4-linux-amd64>" file from
dssp site.
Please see the other thread with this exact same issue as we have gone through a
number of troubleshooting steps.
-Justin
On Mon, Feb 16, 2015 at 11:52 PM, Justin Lemkul <jalem...@vt.edu> wrote:
After looking at this a bit more closely for someone else who asked the
same question, your clue is here:
dssp cmd='/usr/local/bin/dssp -na dd31ZWbc ddI6at3a > /dev/null 2>
/dev/null'
For some reason your do_dssp command is triggering version 1 syntax. A
version 2 command should be something like:
dssp cmd='/usr/local/bin/dssp -i ddYB5REk -o ddxi1TAx > /dev/null 2>
/dev/null'
Note the difference in -i/-o vs. -na. This is the nature of the problem
when dealing with different versions. Somehow there's a disconnect between
your DSSP version or the command you're telling us you're issuing.
-Justin
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==================================================
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
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University of Maryland, Baltimore
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul
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