Dear all, I am very new to Gramacs (switching from AMBER in order to use GROMOS and CHARMM force fields for carbohydrates) and need some help in preparing topologies. I had a brief look in the tutorials and gromacs force field files but I could not find any useful information about using GROMOS or CHARMM force-field for monosaccharides. I would very happy of there are some tutorial where it is described. I had a deep look in the ff files and it loooks like parameters for carbohydrates are not included like for proteins (as it is done for GLYCAM in Amber). Can someone suggest me how to set-up a simulation of protein monosaccharides (Methyl-Mannose) using GROMOS and also CHARM. Moreover, what would be the appropriate choice for protein in both case ? Although, I would like to use AMBER for proteins.
Many thanks, Mish -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
