Dear gmx users, I have a biphasic system, like Justin's tutorial, but I want to control the protein to adsorb/desorb from the oil-water interface, I don't want the protein to go through oil phase just want to keep it at the interface, I have added a constant force at the end of the mdp file. i tried different pull_k1 values but what I see is, when the force is applied the oil is also deformed (which makes sense) and kinda make a hole in the oil phase and eventually pass through it. I just want to keep it at or away from the interface without deforming/puling away the oil molecules, What is the best way to do it? any suggestion? here is the mdp https://drive.google.com/open?id=0B0YMTXH1gmQsZ1ljOUZROWNGM3M&authuser=0
cheers James -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
