Hi Surya, Non-Water is a default index group. Just select that when running trjconv.
Cheers, Tsjerk On Tue, May 12, 2015 at 8:34 AM, Seera Suryanarayana <paluso...@gmail.com> wrote: > Dear gromacs users > I have simulated a protein for 500ns in solvent system. I want to remove > water molecules from the system to further analysis. I have gone through > the manual, but I couldn't find how to remove water molecules. Kindly tell > me how can I do it. > > Thanks in Advance > Surya > Graduate student > India. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Tsjerk A. Wassenaar, Ph.D. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.