Dear gmx users, I’m trying to create a thylakoid membrane (from cyanobacteria) with the following lipid composition: 18:1-16:0 PG 5.557% 16:1-16:0 PG 0.543% 18:1-16:0 DGDG 25.600% 18:1-16:0 MGDG 43.500% 18:1-16:0 SQDG 24.774% 16:0-16:0 SQDG 0.026% To do that, i’m using insane.py, by the following command line:
./insane.py -f PSII-CG.pdb -pbc square -box 20, 20, 10 -l CPG:0.5557 -l PPG:0.0543 -l CDGDG:2.56 -l CMGDG:4.35 -l CSQDB:2.4774 -l CSQDG:0.0026 -sol W -o system.gro But i’m getting the next error message: Traceback (most recent call last): File "./insane.py", line 559, in <module> options[ar].setvalue([args.pop(0) for i in range(options[ar].num)]) File "./insane.py", line 441, in setvalue self.value = self.func(v[0]) File "./insane.py", line 302, in readBox x = [ float(i) for i in a.split(",") ] + 6*[0] ValueError: could not convert string to float: Is this because i’m using float numbers to describe the specific amount of lipids? If this is the case, can someone suggest me an approach to overcome this issue? Thanks in advance, Carlos -- Carlos Navarro Retamal Bioinformatics Engineering Ph. D (c) Applied Sciences. Center of Bioinformatics and Molecular Simulations. CBSM University of Talca Av. Lircay S/N, Talca, Chile T: (+56) 712201 798 E: carlos.navarr...@gmail.com or cnava...@utalca.cl -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.