On Mon, May 18, 2015 at 9:15 PM Andrew Bostick <andrew.bosti...@gmail.com> wrote:
> Dear Mark > > I installed the newest version of cmake (3.2.2). > > After using cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON > > CUDA_TOOLKIT_ROOT_DIR not found or specified > -- Could NOT find CUDA (missing: CUDA_TOOLKIT_ROOT_DIR > CUDA_NVCC_EXECUTABLE CUDA_INCLUDE_DIRS CUDA_CUDART_LIBRARY) (Required is at > least version "4.0") > -- No compatible CUDA toolkit found (v4.0+), disabling native GPU > acceleration > -- The GROMACS-managed build of FFTW 3 will configure with the following > optimizations: --enable-sse2 > Downloading: > http://gerrit.gromacs.org/download/regressiontests-5.0.5.tar.gz > -- [download 100% complete] > CMake Error at tests/CMakeLists.txt:57 (message): > error: downloading > 'http://gerrit.gromacs.org/download/regressiontests-5.0.5.tar.gz' failed > > status_code: 1 > > status_string: "Unsupported protocol" > > log: Hostname was NOT found in DNS cache > > Trying 130.237.25.133... > > Connected to gerrit.gromacs.org (130.237.25.133) port 80 (#0) > > GET /download/regressiontests-5.0.5.tar.gz HTTP/1.1 > > User-Agent: curl/7.38.0 > > Host: gerrit.gromacs.org > > Accept: */* > > > > HTTP/1.1 302 Found > > Date: Mon, 18 May 2015 19:11:21 GMT > > Server Apache/2.2.22 (Ubuntu) is not blacklisted > > Server: Apache/2.2.22 (Ubuntu) > > Location: > https://kth.box.com/shared/static/ft4o4qpm318vsrori35sqhcuv5w6qjnu.gz > > Vary: Accept-Encoding > > Content-Length: 337 > > Content-Type: text/html; charset=iso-8859-1 > > > > Ignoring the response-body > > <!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN"> > > <html><head> > > <title>302 Found</title> > > </head><body> > > <h1>Found</h1> > > <p>The document has moved <a > href=" > https://kth.box.com/shared/static/ft4o4qpm318vsrori35sqhcuv5w6qjnu.gz > ">here</a>.</p> > > > <hr> > > <address>Apache/2.2.22 (Ubuntu) Server at gerrit.gromacs.org Port > 80</address> > > </body></html> > > Connection #0 to host gerrit.gromacs.org left intact > > Issue another request to this URL: > 'https://kth.box.com/shared/static/ft4o4qpm318vsrori35sqhcuv5w6qjnu.gz' > > Protocol "https" not supported or disabled in libcurl > All of the above redirection is correct behaviour for our setup, but the problem is that your CMake is linking to an unsuitable version of libcurl. See http://www.cmake.org/pipermail/cmake-developers/2013-July/019430.html for background. You can maybe change your openssl library, file a bug with Ubuntu, use a Kitware-provided CMake binary, build your own, download the GROMACS tests yourself... Mark > Closing connection -1 > > > > -- Configuring incomplete, errors occurred! > See also > "/export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeOutput.log". > See also > "/export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeError.log". > > --------------------------------------------------------- > > the content of CMakeOutput.log file is as follows: > > The system is: Linux - 2.6.32-431.11.2.el6.x86_64 - x86_64 > Compiling the C compiler identification source file "CMakeCCompilerId.c" > succeeded. > Compiler: /usr/bin/cc > Build flags: > Id flags: > > The output was: > 0 > > > Compilation of the C compiler identification source "CMakeCCompilerId.c" > produced "a.out" > > The C compiler identification is GNU, found in > > "/export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/3.2.2/CompilerIdC/a.out" > > Compiling the CXX compiler identification source file > "CMakeCXXCompilerId.cpp" succeeded. > Compiler: /usr/bin/c++ > Build flags: > Id flags: > > The output was: > 0 > > > Compilation of the CXX compiler identification source > "CMakeCXXCompilerId.cpp" produced "a.out" > > The CXX compiler identification is GNU, found in > > "/export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/3.2.2/CompilerIdCXX/a.out" > > Determining if the C compiler works passed with the following output: > Change Dir: /export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp > > Run Build Command:"/usr/bin/gmake" "cmTryCompileExec2875484959/fast" > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec2875484959.dir/build.make > CMakeFiles/cmTryCompileExec2875484959.dir/build > @ > "CMakeOutput.log" 1317L, 113885C > > ---------------------------------------------------------- > the content of CMakeError.log file is as follows: > > Performing C SOURCE FILE Test CFLAGS_EXCESS_PREC failed with the following > output: > Change Dir: /export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp > > Run Build Command:"/usr/bin/gmake" "cmTryCompileExec2440156335/fast" > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec2440156335.dir/build.make > CMakeFiles/cmTryCompileExec2440156335.dir/build > gmake[1]: Entering directory > `/state/partition1/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report > /export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec2440156335.dir/src.c.o > /usr/bin/cc -DCFLAGS_EXCESS_PREC -fexcess-precision=fast -o > CMakeFiles/cmTryCompileExec2440156335.dir/src.c.o -c > /export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp/src.c > cc1: error: unrecognized command line option "-fexcess-precision=fast" > gmake[1]: *** [CMakeFiles/cmTryCompileExec2440156335.dir/src.c.o] Error 1 > gmake[1]: Leaving directory > `/state/partition1/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp' > gmake: *** [cmTryCompileExec2440156335/fast] Error 2 > > Source file was: > int main(void) { return 0; } > Performing C++ SOURCE FILE Test CXXFLAGS_EXCESS_PREC failed with the > following output: > Change Dir: /export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp > > Run Build Command:"/usr/bin/gmake" "cmTryCompileExec188469838/fast" > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec188469838.dir/build.make > CMakeFiles/cmTryCompileExec188469838.dir/build > gmake[1]: Entering directory > `/state/partition1/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report > /export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp/CMakeFiles 1 > Building CXX object CMakeFiles/cmTryCompileExec188469838.dir/src.cxx.o > /usr/bin/c++ -DCXXFLAGS_EXCESS_PREC -fexcess-precision=fast -o > CMakeFiles/cmTryCompileExec188469838.dir/src.cxx.o -c > /export/apps/gromacs/gromacs-5.0.5/build/CMakeFiles/CMakeTmp/src.cxx > cc1plus: error: unrecognized command line option "-fexcess-precision=fast" > --------------------------------------------------------- > > How to resolve this issue? > Thanks in advance > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? 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