Hi Tuong Vy, An octahedral or dodecahedral box is pretty tricky. I have a Pymol script for generating them, but it will probably require some more work...
Cheers, Tsjerk On May 19, 2015 13:18, "Vy Phan" <phanvy120...@gmail.com> wrote: > Dear Gromacs Users, > I have the problem with generating the octahedron box. I always get the > rectangular box (using VMD) > When I searched on the gmx maillist, I saw some people met same problem. > Is problem is normal in gromacs? > > After run simulation, I can display the trajectory on VMD by using the > command trjconv -pbc mol -ur compact for converting the system. But I can > not display the octahedron box after solvated system. > > Could someone help me ? > > Tuong Vy > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
