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On 5/27/15 12:52 AM, Biplab Ghosh wrote:
Thank you Justin.
I am sorry for not being able to properly pose the problem!

I need to know the variation in distance between two residues during the
course of the trajectory. I was not sure whether the command  was  correct
or not!


The command is correct (for CA-CA distance, which is not necessarily the same as a residue-residue distance). I didn't understand why you thought you hadn't achieved what you wanted.

-Justin

--
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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