Hi All,

              I want to calculate orientation angle of protein at organic/water 
interface asdone in the following paper:” Replica-ExchangeMolecular Dynamics 
Simulation of Basic Fibroblast Growth Factor Adsorption onHydroxyapatite”


http://pubs.acs.org/doi/abs/10.1021/jp501463r


 
But, I don’t know how todefine interface vector as the molecules at the 
interface are periodic.


 
Can you please guide me inthis regard


 
Thanks


 
Mahreen

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