*not topologies - mdp files On Sun, Jun 28, 2015 at 8:22 PM, Vidyalakshmi CM <vidyalakshmi...@gmail.com> wrote:
> Hi, > > You may use the mdp files from the tutorial > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme/ > (It has topologies for energy minimzation, nvt and npt simulations and md > simulations run). > > Regards, > C.M.Vidyalakshmi > > On Sun, Jun 28, 2015 at 8:19 PM, masoud aliyar <masoud.ali...@gmail.com> > wrote: > >> Hello dear friends >> >> I want to simulate a Ligand-Protein complex in GROMACS by using amber >> forcefield >> < >> https://www.google.com/search?q=forcefield&newwindow=1&sa=X&biw=1366&bih=657&tbm=isch&tbo=u&source=univ&ei=WEaQVYH_AoWdsgH06q6ICg&ved=0CE4QsAQ >> > >> and need essential MDP files. Can anyone provide me that files? >> -- >> Gromacs Users mailing list >> >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before >> posting! >> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> * For (un)subscribe requests visit >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >> send a mail to gmx-users-requ...@gromacs.org. >> > > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
