Dear gromacs-users, Sorry in previous the attached link was not working. I have run umbrella samplling for RNA and nanoparticle. For this system, I got the PMF in which there is no plateau value and it has constant minimum value. in the last window of umbrella samplling, there is no interaction between RNA and nanoparticle and even though adding of more windows also I am not getting plateu value in PMF profile. From this profile can i calculate the binding free energy? please suggest me.
The link for the PMF profile https://drive.google.com/file/d/0B8-QvKcIYQHxaVI4X0llNjBna2c/view?usp=sharing Thanks Sathish -- regards M.SathishKumar -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.