Dear Gromacs users, I am working with membrane proteins. I have generated the membrane-protein system ( contains lipids, protein, water and ions) with some specification. For eg., I have positioned few ions and water molecules at particular location using some in-house programs. Now, I would like to generate topology for the my system in order to run MD using Gromacs. Since my system is ready-made, I cant follow the methodology adopt by Gromcas membrane-protein tutorials.
Hence, can anybody suggest me a way to generate Gromacs inputs files for such ready-made membrane-protein systems? Thanks in advance Anu -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
