On 9/11/15 2:43 AM, Shahid Nayeem wrote:
Dear all I have used g_hbond with -hbn -hbm flag to get .ndx file and .xpm file. Then with xpm2ps I converted .xpm to .eps file. I get half the number of rows in .eps file as compared to .ndx file. when using Justins perl script I got summary of existence file and here 12 bonds are shown but in .eps file only 6 rows are plotted. I know that the bonds are plotted in reverse order but here only half number of bonds are plotted in .eps file. please help to resolve this issue.
You're probably looking at the wrong entry in the index file. Hard to imagine these could be mismatched.
-Justin -- ================================================== Justin A. Lemkul, Ph.D. Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 629 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 http://mackerell.umaryland.edu/~jalemkul ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
