Dear gromacs users, I have been trying to simulate the xtal structure which is homo tetramer and each chain has more than 400 amino acids. after editconf where I have used the cubic box with -c -d 1.0. After this command I have executed the following command..
gmx solvate -cp 4pv1.gro -cs spc216.gro -o 4cp1_solv.gro -p topal.top and I got the error as .. Fatal error: One of the box vectors has become shorter than twice the cut-off length or box_yy-|box_zy| or box_zz has become smaller than the cut-off. When I checked the gromacs archive somewhere mentioned that violating minimum image convention. I don't understand what does it mean. Kindly tell me why this error is encountered and how do I resolve it? Thanks in advance Surya Graduate student India. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
