Hello all, I just finished a short simulation of a membrane protein system and trying to visualize the final gro file generated from the simulation using Pymol. Unfortunately, the Pymol failed to visualize the protein in cartoon representation. Though VMD can do the job, I just wonder is there a way I can visualize the gro file in Pymol. A quick surfing on web suggested to use the editconf to convert the .tpr file to .pdb file for visualizing with Pymol. Unfortunately, here the .tpr file have structural information from the beginning of the simulation rather than at the end of the simulation.
Any suggestion would be very much appreciated. Many thanks Anu -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
