Hi Mark, Thank you for your suggestions Indeed this works: For libxml2: ./configure --prefix=/home/ikosh/programs/autotools-bin --without-python --without-zlib --without-lzma
cmake -DCMAKE_C_COMPILER=mpixlc_r -DCMAKE_CXX_COMPILER=mpixlcxx_r -DCMAKE_TOOLCHAIN_FILE=BlueGeneQ-static-XL-C -DGMX_SIMD=IBM_QPX -DBUILD_SHARED_LIBS=OFF -DGMX_XML=OFF -DGMX_PREFER_STATIC_LIBS=ON -DCMAKE_C_FLAGS="-O3 -qsmp=omp -qarch=qp -qtune=qp" -DCMAKE_INSTALL_PREFIX=/gpfs/vesta-home/ikosh/gromacs-5.1.1/install -- Looking for NVIDIA GPUs present in the system -- Checking for MPI_IN_PLACE - yes -- Looking for zlibVersion in /home/ikosh/programs/autotools-bin/lib/libz.a -- Looking for zlibVersion in /home/ikosh/programs/autotools-bin/lib/libz.a - found -- Found LibXml2: /home/ikosh/programs/autotools-bin/lib/libxml2.a (found version "2.9.3") -- Looking for xmlTextWriterEndAttribute in /home/ikosh/programs/autotools-bin/lib/libxml2.a -- Looking for xmlTextWriterEndAttribute in /home/ikosh/programs/autotools-bin/lib/libxml2.a - found!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Irina. -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Mark Abraham Sent: Monday, February 15, 2016 9:30 AM To: [email protected] Subject: Re: [gmx-users] gromacs-5.1.1 installation error: libxml2 problem Hi, Now that I have a computer again, I looked up what I did on Vesta, and in fact you don't need zlib support from libxml2, so just configure libxml2 without that (and without python), and you'll be fine. I am also looking at how we can take this useless activity away from people... Mark -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected]. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
