Thank you Sir for your suggestions. But sir I am simulating only protein in water where pdb2gmx itself generates topol.top and porse.itp files. The topol.top file is already have command to include .itp file generated by gmx. In editconf defining boxtype with cubic and dimension 1.0.
On Thu, Feb 18, 2016 at 4:11 PM, Nikhil Maroli <scinik...@gmail.com> wrote: > HI, > you can follow this tutorial ,you might seen it but missed the part of > topol.top > you have to include *itp files and Molecules in topology,it is very easy > > There are lots of threads in this mailing list regarding this, > > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx- > tutorials/complex/ > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Subhashree Rout PhD Scholar Bioinformatics Lab KIIT School of Biotechnology KIIT University Bhubaneswar Odisha INDIA Pin-751024 -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
