On 2/21/16 3:15 PM, mohammad r wrote:
Hi everybody, Is it correct to say the potential energy after energyminimization should be negative and in the order of 105-106 ?according to gromacs tutorial: http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme/05_EM.html
As a broad generalization, but strictly speaking, that's not always true. A comparable protein in a similarly sized box will probably have something on that order, but that is by no means an absolute rule.
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