The CmakeErroor.log file have following things Performing C SOURCE FILE Test CFLAGS_EXCESS_PREC failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTC_bf3f2/fast" /usr/bin/gmake -f CMakeFiles/cmTC_bf3f2.dir/build.make CMakeFiles/cmTC_bf3f2.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_bf3f2.dir/src.c.o /usr/bin/cc -DCFLAGS_EXCESS_PREC -fexcess-precision=fast -o CMakeFiles/cmTC_bf3f2.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c cc1: error: unrecognized command line option "-fexcess-precision=fast" gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake[1]: *** [CMakeFiles/cmTC_bf3f2.dir/src.c.o] Error 1 gmake: *** [cmTC_bf3f2/fast] Error 2 Source file was: int main(void) { return 0; } Performing C++ SOURCE FILE Test CXXFLAGS_EXCESS_PREC failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_2e3fd/fast" /usr/bin/gmake -f CMakeFiles/cmTC_2e3fd.dir/build.make CMakeFiles/cmTC_2e3fd.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_2e3fd.dir/src.cxx.o /usr/bin/c++ -DCXXFLAGS_EXCESS_PREC -fexcess-precision=fast -o CMakeFiles/cmTC_2e3fd.dir/src.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx cc1plus: error: unrecognized command line option "-fexcess-precision=fast" gmake[1]: *** [CMakeFiles/cmTC_2e3fd.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_2e3fd/fast] Error 2 Source file was: int main() { return 0;} Determining if files io.h exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_c44f7/fast" /usr/bin/gmake -f CMakeFiles/cmTC_c44f7.dir/build.make CMakeFiles/cmTC_c44f7.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_c44f7.dir/CheckIncludeFiles.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -o CMakeFiles/cmTC_c44f7.dir/CheckIncludeFiles.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckIncludeFiles.c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckIncludeFiles.c:2:16: error: io.h: No such file or directory gmake[1]: *** [CMakeFiles/cmTC_c44f7.dir/CheckIncludeFiles.c.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_c44f7/fast] Error 2 Source: /* */ #include <io.h> int main(void){return 0;} Determining if the memalign exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_bf2d4/fast" /usr/bin/gmake -f CMakeFiles/cmTC_bf2d4.dir/build.make CMakeFiles/cmTC_bf2d4.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_bf2d4.dir/CheckSymbolExists.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -o CMakeFiles/cmTC_bf2d4.dir/CheckSymbolExists.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8: error: ‘memalign’ was not declared in this scope gmake[1]: *** [CMakeFiles/cmTC_bf2d4.dir/CheckSymbolExists.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_bf2d4/fast] Error 2 File /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: /* */ #include <stdlib.h> int main(int argc, char** argv) { (void)argv; #ifndef memalign return ((int*)(&memalign))[argc]; #else (void)argc; return 0; #endif } Determining if the _aligned_malloc exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_956e1/fast" /usr/bin/gmake -f CMakeFiles/cmTC_956e1.dir/build.make CMakeFiles/cmTC_956e1.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_956e1.dir/CheckSymbolExists.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -o CMakeFiles/cmTC_956e1.dir/CheckSymbolExists.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8: error: ‘_aligned_malloc’ was not declared in this scope gmake[1]: *** [CMakeFiles/cmTC_956e1.dir/CheckSymbolExists.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_956e1/fast] Error 2 File /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: /* */ #include <stdlib.h> int main(int argc, char** argv) { (void)argv; #ifndef _aligned_malloc return ((int*)(&_aligned_malloc))[argc]; #else (void)argc; return 0; #endif } Determining if the _fileno exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_c09ea/fast" /usr/bin/gmake -f CMakeFiles/cmTC_c09ea.dir/build.make CMakeFiles/cmTC_c09ea.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_c09ea.dir/CheckSymbolExists.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -o CMakeFiles/cmTC_c09ea.dir/CheckSymbolExists.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8: error: ‘_fileno’ was not declared in this scope gmake[1]: *** [CMakeFiles/cmTC_c09ea.dir/CheckSymbolExists.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_c09ea/fast] Error 2 File /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: /* */ #include <stdio.h> int main(int argc, char** argv) { (void)argv; #ifndef _fileno return ((int*)(&_fileno))[argc]; #else (void)argc; return 0; #endif } Determining if the _commit exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_a9cfb/fast" /usr/bin/gmake -f CMakeFiles/cmTC_a9cfb.dir/build.make CMakeFiles/cmTC_a9cfb.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_a9cfb.dir/CheckSymbolExists.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -o CMakeFiles/cmTC_a9cfb.dir/CheckSymbolExists.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:2:16: error: io.h: No such file or directory /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8: error: ‘_commit’ was not declared in this scope gmake[1]: *** [CMakeFiles/cmTC_a9cfb.dir/CheckSymbolExists.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_a9cfb/fast] Error 2 File /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: /* */ #include <io.h> int main(int argc, char** argv) { (void)argv; #ifndef _commit return ((int*)(&_commit))[argc]; #else (void)argc; return 0; #endif } Determining if the rsqrt exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_f9a6b/fast" /usr/bin/gmake -f CMakeFiles/cmTC_f9a6b.dir/build.make CMakeFiles/cmTC_f9a6b.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_f9a6b.dir/CheckSymbolExists.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -o CMakeFiles/cmTC_f9a6b.dir/CheckSymbolExists.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8: error: ‘rsqrt’ was not declared in this scope gmake[1]: *** [CMakeFiles/cmTC_f9a6b.dir/CheckSymbolExists.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_f9a6b/fast] Error 2 File /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: /* */ #include <math.h> int main(int argc, char** argv) { (void)argv; #ifndef rsqrt return ((int*)(&rsqrt))[argc]; #else (void)argc; return 0; #endif } Determining if the rsqrtf exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_b3e92/fast" /usr/bin/gmake -f CMakeFiles/cmTC_b3e92.dir/build.make CMakeFiles/cmTC_b3e92.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_b3e92.dir/CheckSymbolExists.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -o CMakeFiles/cmTC_b3e92.dir/CheckSymbolExists.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: In function ‘int main(int, char**)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx:8: error: ‘rsqrtf’ was not declared in this scope gmake[1]: *** [CMakeFiles/cmTC_b3e92.dir/CheckSymbolExists.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_b3e92/fast] Error 2 File /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: /* */ #include <math.h> int main(int argc, char** argv) { (void)argv; #ifndef rsqrtf return ((int*)(&rsqrtf))[argc]; #else (void)argc; return 0; #endif } Determining if the system is big endian passed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_2b7fc/fast" /usr/bin/gmake -f CMakeFiles/cmTC_2b7fc.dir/build.make CMakeFiles/cmTC_2b7fc.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_2b7fc.dir/TestEndianess.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -o CMakeFiles/cmTC_2b7fc.dir/TestEndianess.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/TestEndianess.c Linking C executable cmTC_2b7fc /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2b7fc.dir/link.txt --verbose=1 /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter CMakeFiles/cmTC_2b7fc.dir/TestEndianess.c.o -o cmTC_2b7fc -rdynamic gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' TestEndianess.c: /* A 16 bit integer is required. */ typedef unsigned short cmakeint16; /* On a little endian machine, these 16bit ints will give "THIS IS LITTLE ENDIAN." On a big endian machine the characters will be exchanged pairwise. */ const cmakeint16 info_little[] = {0x4854, 0x5349, 0x4920, 0x2053, 0x494c, 0x5454, 0x454c, 0x4520, 0x444e, 0x4149, 0x2e4e, 0x0000}; /* on a big endian machine, these 16bit ints will give "THIS IS BIG ENDIAN." On a little endian machine the characters will be exchanged pairwise. */ const cmakeint16 info_big[] = {0x5448, 0x4953, 0x2049, 0x5320, 0x4249, 0x4720, 0x454e, 0x4449, 0x414e, 0x2e2e, 0x0000}; #ifdef __CLASSIC_C__ int main(argc, argv) int argc; char *argv[]; #else int main(int argc, char *argv[]) #endif { int require = 0; require += info_little[argc]; require += info_big[argc]; (void)argv; return require; } Determining if the pthread_create exist failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_6c74e/fast" /usr/bin/gmake -f CMakeFiles/cmTC_6c74e.dir/build.make CMakeFiles/cmTC_6c74e.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_6c74e.dir/CheckSymbolExists.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -o CMakeFiles/cmTC_6c74e.dir/CheckSymbolExists.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c Linking C executable cmTC_6c74e /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_6c74e.dir/link.txt --verbose=1 /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter CMakeFiles/cmTC_6c74e.dir/CheckSymbolExists.c.o -o cmTC_6c74e -rdynamic CMakeFiles/cmTC_6c74e.dir/CheckSymbolExists.c.o: In function `main': CheckSymbolExists.c:(.text+0xc): undefined reference to `pthread_create' collect2: ld returned 1 exit status gmake[1]: *** [cmTC_6c74e] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_6c74e/fast] Error 2 File /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: /* */ #include <pthread.h> int main(int argc, char** argv) { (void)argv; #ifndef pthread_create return ((int*)(&pthread_create))[argc]; #else (void)argc; return 0; #endif } Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_95ca6/fast" /usr/bin/gmake -f CMakeFiles/cmTC_95ca6.dir/build.make CMakeFiles/cmTC_95ca6.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_95ca6.dir/CheckFunctionExists.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTC_95ca6.dir/CheckFunctionExists.c.o -c /usr/local/share/cmake-3.4/Modules/CheckFunctionExists.c Linking C executable cmTC_95ca6 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_95ca6.dir/link.txt --verbose=1 /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/cmTC_95ca6.dir/CheckFunctionExists.c.o -o cmTC_95ca6 -rdynamic -lpthreads /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status gmake[1]: *** [cmTC_95ca6] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_95ca6/fast] Error 2 Performing C SOURCE FILE Test _isfinite_compile_ok failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_808f2/fast" /usr/bin/gmake -f CMakeFiles/cmTC_808f2.dir/build.make CMakeFiles/cmTC_808f2.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_808f2.dir/src.c.o /usr/bin/cc -I/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/math.h -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -D_isfinite_compile_ok -o CMakeFiles/cmTC_808f2.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c: In function ‘main’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:4: warning: implicit declaration of function ‘_isfinite’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:5: warning: control reaches end of non-void function /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:4: warning: ‘f’ is used uninitialized in this function Linking C executable cmTC_808f2 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_808f2.dir/link.txt --verbose=1 /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -D_isfinite_compile_ok CMakeFiles/cmTC_808f2.dir/src.c.o -o cmTC_808f2 -rdynamic -lm CMakeFiles/cmTC_808f2.dir/src.c.o: In function `main': src.c:(.text+0x16): undefined reference to `_isfinite' collect2: ld returned 1 exit status gmake[1]: *** [cmTC_808f2] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_808f2/fast] Error 2 Source file was: #include <math.h> int main(void) { float f; _isfinite(f); } Performing C SOURCE FILE Test _finite_compile_ok failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_3fecf/fast" /usr/bin/gmake -f CMakeFiles/cmTC_3fecf.dir/build.make CMakeFiles/cmTC_3fecf.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_3fecf.dir/src.c.o /usr/bin/cc -I/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/float.h -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -D_finite_compile_ok -o CMakeFiles/cmTC_3fecf.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c: In function ‘main’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:4: warning: implicit declaration of function ‘_finite’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:5: warning: control reaches end of non-void function /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:4: warning: ‘f’ is used uninitialized in this function Linking C executable cmTC_3fecf /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_3fecf.dir/link.txt --verbose=1 /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -D_finite_compile_ok CMakeFiles/cmTC_3fecf.dir/src.c.o -o cmTC_3fecf -rdynamic CMakeFiles/cmTC_3fecf.dir/src.c.o: In function `main': src.c:(.text+0x16): undefined reference to `_finite' collect2: ld returned 1 exit status gmake[1]: *** [cmTC_3fecf] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_3fecf/fast] Error 2 Source file was: #include <float.h> int main(void) { float f; _finite(f); } Performing C++ SOURCE FILE Test GMX_CXX11_SUPPORTED failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_9fa68/fast" /usr/bin/gmake -f CMakeFiles/cmTC_9fa68.dir/build.make CMakeFiles/cmTC_9fa68.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_9fa68.dir/src.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DGMX_CXX11_SUPPORTED -std=c++0x -o CMakeFiles/cmTC_9fa68.dir/src.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:10: sorry, unimplemented: cannot expand ‘Tail ...’ into a fixed-length argument list /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:11: error: ‘int’ is not a class type /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:11: error: ‘ListType’ in class ‘int’ does not name a type /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:11: error: template argument 2 is invalid /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:11: error: expected ‘::’ before ‘ListType’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:13: error: only declarations of constructors can be ‘explicit’ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/unique_ptr.h: In copy constructor ‘A::A(const A&)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:4: instantiated from ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Tp*, _Args&& ...) [with _Args = A, _Tp = A]’ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/vector.tcc:95: instantiated from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = A, _Tp = A, _Alloc = std::allocator<A>]’ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:747: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(_Tp&&) [with _Tp = A, _Alloc = std::allocator<A>]’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:20: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/unique_ptr.h:214: error: deleted function ‘std::unique_ptr<_Tp, _Tp_Deleter>::unique_ptr(const std::unique_ptr<_Tp, _Tp_Deleter>&) [with _Tp = int, _Tp_Deleter = std::default_delete<int>]’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:4: error: used here In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h:34, from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h:48, from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/vector:62, from /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:1: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h: In member function ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Tp*, _Args&& ...) [with _Args = A, _Tp = A]’: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h:111: note: synthesized method ‘A::A(const A&)’ first required here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/unique_ptr.h: In member function ‘A& A::operator=(const A&)’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:4: instantiated from ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, _Args&& ...) [with _Args = A, _Tp = A, _Alloc = std::allocator<A>]’ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/vector.tcc:100: instantiated from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = A, _Tp = A, _Alloc = std::allocator<A>]’ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h:747: instantiated from ‘void std::vector<_Tp, _Alloc>::push_back(_Tp&&) [with _Tp = A, _Alloc = std::allocator<A>]’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:20: instantiated from here /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/unique_ptr.h:219: error: deleted function ‘std::unique_ptr<_Tp, _Tp_Deleter>& std::unique_ptr<_Tp, _Tp_Deleter>::operator=(const std::unique_ptr<_Tp, _Tp_Deleter>&) [with _Tp = int, _Tp_Deleter = std::default_delete<int>]’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:4: error: used here In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/vector:69, from /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:1: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(__gnu_cxx::__normal_iterator<typename std::_Vector_base<_Tp, _Alloc>::_Tp_alloc_type::pointer, std::vector<_Tp, _Alloc> >, _Args&& ...) [with _Args = A, _Tp = A, _Alloc = std::allocator<A>]’: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/vector.tcc:314: note: synthesized method ‘A& A::operator=(const A&)’ first required here gmake[1]: *** [CMakeFiles/cmTC_9fa68.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_9fa68/fast] Error 2 Source file was: #include <vector> #include <memory> #include <utility> struct A { A(int *i=NULL) : p(i) {} ; std::unique_ptr<int> p; }; template <typename Head, typename... Tail> struct VarList { typedef VarList<Tail...> VarListTail; typedef std::pair<Head, typename VarListTail::ListType> ListType; }; class a { explicit operator bool() {return true;} }; int main() { typedef std::unique_ptr<int> intPointer; intPointer p(new int(10)); std::vector<intPointer> v; v.push_back(std::move(p)); std::vector<A> v2; v2.push_back(A()); //requires default move constructor v2.push_back(A(new int(5))); //detects bug in ICC } Determining if the include file regex exists failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_906d5/fast" /usr/bin/gmake -f CMakeFiles/cmTC_906d5.dir/build.make CMakeFiles/cmTC_906d5.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_906d5.dir/CheckIncludeFile.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -o CMakeFiles/cmTC_906d5.dir/CheckIncludeFile.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckIncludeFile.cxx In file included from /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/regex:35, from /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/CheckIncludeFile.cxx:1: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. gmake[1]: *** [CMakeFiles/cmTC_906d5.dir/CheckIncludeFile.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_906d5/fast] Error 2 Performing C SOURCE FILE Test C_FLAG_march_core_avx2 failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_7715e/fast" /usr/bin/gmake -f CMakeFiles/cmTC_7715e.dir/build.make CMakeFiles/cmTC_7715e.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_7715e.dir/src.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DC_FLAG_march_core_avx2 -march=core-avx2 -o CMakeFiles/cmTC_7715e.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:1: error: bad value (core-avx2) for -march= switch /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:1: error: bad value (core-avx2) for -mtune= switch gmake[1]: *** [CMakeFiles/cmTC_7715e.dir/src.c.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_7715e/fast] Error 2 Source file was: int main(void) { return 0; } Performing C SOURCE FILE Test C_FLAG_mavx2 failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_146f4/fast" /usr/bin/gmake -f CMakeFiles/cmTC_146f4.dir/build.make CMakeFiles/cmTC_146f4.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_146f4.dir/src.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DC_FLAG_mavx2 -mavx2 -o CMakeFiles/cmTC_146f4.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c cc1: error: unrecognized command line option "-mavx2" gmake[1]: *** [CMakeFiles/cmTC_146f4.dir/src.c.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_146f4/fast] Error 2 Source file was: int main(void) { return 0; } Performing C SOURCE FILE Test C_FLAG_arch_AVX failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_34e1f/fast" /usr/bin/gmake -f CMakeFiles/cmTC_34e1f.dir/build.make CMakeFiles/cmTC_34e1f.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_34e1f.dir/src.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DC_FLAG_arch_AVX /arch:AVX -o CMakeFiles/cmTC_34e1f.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c cc: /arch:AVX: No such file or directory gmake[1]: *** [CMakeFiles/cmTC_34e1f.dir/src.c.o] Error 1 gmake[1]: *** Deleting file `CMakeFiles/cmTC_34e1f.dir/src.c.o' gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_34e1f/fast] Error 2 Source file was: int main(void) { return 0; } Performing C SOURCE FILE Test C_FLAG_hgnu failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_c4b7a/fast" /usr/bin/gmake -f CMakeFiles/cmTC_c4b7a.dir/build.make CMakeFiles/cmTC_c4b7a.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_c4b7a.dir/src.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DC_FLAG_hgnu -hgnu -o CMakeFiles/cmTC_c4b7a.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c cc: unrecognized option '-hgnu' Linking C executable cmTC_c4b7a /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_c4b7a.dir/link.txt --verbose=1 /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DC_FLAG_hgnu -hgnu CMakeFiles/cmTC_c4b7a.dir/src.c.o -o cmTC_c4b7a -rdynamic cc: unrecognized option '-hgnu' gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Source file was: int main(void) { return 0; } Performing C SOURCE FILE Test C_SIMD_COMPILES_FLAG_ failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_413ec/fast" /usr/bin/gmake -f CMakeFiles/cmTC_413ec.dir/build.make CMakeFiles/cmTC_413ec.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_413ec.dir/src.c.o /usr/bin/cc -Wundef -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DC_SIMD_COMPILES_FLAG_ -o CMakeFiles/cmTC_413ec.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c: In function ‘main’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:2: error: ‘__m256i’ undeclared (first use in this function) /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:2: error: (Each undeclared identifier is reported only once /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:2: error: for each function it appears in.) /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:2: error: expected ‘;’ before ‘x’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:2: error: ‘x’ undeclared (first use in this function) /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:2: warning: implicit declaration of function ‘_mm256_add_epi32’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c:2: warning: implicit declaration of function ‘_mm256_movemask_epi8’ gmake[1]: *** [CMakeFiles/cmTC_413ec.dir/src.c.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_413ec/fast] Error 2 Source file was: #include<immintrin.h> int main(){__m256i x=_mm256_set1_epi32(5);x=_mm256_add_epi32(x,x);return _mm256_movemask_epi8(x);} Performing C++ SOURCE FILE Test CXX_FLAG_march_core_avx2 failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_201e9/fast" /usr/bin/gmake -f CMakeFiles/cmTC_201e9.dir/build.make CMakeFiles/cmTC_201e9.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_201e9.dir/src.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DCXX_FLAG_march_core_avx2 -march=core-avx2 -o CMakeFiles/cmTC_201e9.dir/src.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:1: error: bad value (core-avx2) for -march= switch /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:1: error: bad value (core-avx2) for -mtune= switch gmake[1]: *** [CMakeFiles/cmTC_201e9.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_201e9/fast] Error 2 Source file was: int main() { return 0;} Performing C++ SOURCE FILE Test CXX_FLAG_mavx2 failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_e71b8/fast" /usr/bin/gmake -f CMakeFiles/cmTC_e71b8.dir/build.make CMakeFiles/cmTC_e71b8.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_e71b8.dir/src.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DCXX_FLAG_mavx2 -mavx2 -o CMakeFiles/cmTC_e71b8.dir/src.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx cc1plus: error: unrecognized command line option "-mavx2" gmake[1]: *** [CMakeFiles/cmTC_e71b8.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_e71b8/fast] Error 2 Source file was: int main() { return 0;} Performing C++ SOURCE FILE Test CXX_FLAG_arch_AVX failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_abed8/fast" /usr/bin/gmake -f CMakeFiles/cmTC_abed8.dir/build.make CMakeFiles/cmTC_abed8.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_abed8.dir/src.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DCXX_FLAG_arch_AVX /arch:AVX -o CMakeFiles/cmTC_abed8.dir/src.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx c++: /arch:AVX: No such file or directory gmake[1]: *** [CMakeFiles/cmTC_abed8.dir/src.cxx.o] Error 1 gmake[1]: *** Deleting file `CMakeFiles/cmTC_abed8.dir/src.cxx.o' gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_abed8/fast] Error 2 Source file was: int main() { return 0;} Performing C++ SOURCE FILE Test CXX_FLAG_hgnu failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_00366/fast" /usr/bin/gmake -f CMakeFiles/cmTC_00366.dir/build.make CMakeFiles/cmTC_00366.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_00366.dir/src.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DCXX_FLAG_hgnu -hgnu -o CMakeFiles/cmTC_00366.dir/src.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx c++: unrecognized option '-hgnu' Linking CXX executable cmTC_00366 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_00366.dir/link.txt --verbose=1 /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DCXX_FLAG_hgnu -hgnu CMakeFiles/cmTC_00366.dir/src.cxx.o -o cmTC_00366 -rdynamic c++: unrecognized option '-hgnu' gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Source file was: int main() { return 0;} Performing C++ SOURCE FILE Test CXX_SIMD_COMPILES_FLAG_ failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_1c2c7/fast" /usr/bin/gmake -f CMakeFiles/cmTC_1c2c7.dir/build.make CMakeFiles/cmTC_1c2c7.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_1c2c7.dir/src.cxx.o /usr/bin/c++ -Wundef -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DCXX_SIMD_COMPILES_FLAG_ -o CMakeFiles/cmTC_1c2c7.dir/src.cxx.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:2: error: ‘__m256i’ was not declared in this scope /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:2: error: expected ‘;’ before ‘x’ /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:2: error: ‘x’ was not declared in this scope /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:2: error: ‘_mm256_add_epi32’ was not declared in this scope /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.cxx:2: error: ‘_mm256_movemask_epi8’ was not declared in this scope gmake[1]: *** [CMakeFiles/cmTC_1c2c7.dir/src.cxx.o] Error 1 gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_1c2c7/fast] Error 2 Source file was: #include<immintrin.h> int main(){__m256i x=_mm256_set1_epi32(5);x=_mm256_add_epi32(x,x);return _mm256_movemask_epi8(x);} ----- Original Message ----- From: "SOUVIK MONDAL" <m.sou...@iitkgp.ac.in> To: "gromacs org gmx-users" <gromacs.org_gmx-users@maillist.sys.kth.se> Sent: Tuesday, February 23, 2016 11:55:18 AM Subject: [gmx-users] Regarding installation problem Hi I have found the following problem regarding gromacs 5.1.2 installation. I have installes cmake and ffftw before. Can you help me out? -- Configuring incomplete, errors occurred! See also "/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeOutput.log". See also "/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeError.log" when I opened that two log files it shows Performing C SOURCE FILE Test CFLAGS_EXCESS_PREC failed with the following output: Change Dir: /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_bf3f2/fast" /usr/bin/gmake -f CMakeFiles/cmTC_bf3f2.dir/build.make CMakeFiles/cmTC_bf3f2.dir/build gmake[1]: Entering directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_bf3f2.dir/src.c.o /usr/bin/cc -DCFLAGS_EXCESS_PREC -fexcess-precision=fast -o CMakeFiles/cmTC_bf3f2.dir/src.c.o -c /root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp/src.c cc1: error: unrecognized command line option "-fexcess-precision=fast" gmake[1]: Leaving directory `/root/Downloads/gromacs-5.1.2/build/CMakeFiles/CMakeTmp' gmake[1]: *** [CMakeFiles/cmTC_bf3f2.dir/src.c.o] Error 1 gmake: *** [cmTC_bf3f2/fast] Error 2 Source file was: int main(void) { return 0; } Performing C++ SOURCE FILE Test CXXFLAGS_EXCESS_PREC failed with the following output: "CMakeError.log" 624L, 40593C -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.