Hi Tsjerk Thanks for your response. I was mainly looking for converting a dppg bilayer in charm36 format into a coarse-grained one. However, the "Mapping" folder does not have any mapping for dppg lipids. Is there any specific suggestion regarding this? Jagannath
On Mon, Feb 29, 2016 at 10:10 PM, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > Hi Jagannath, > > Backward actually can do both. For conversion of a Gromos system use > > backward.py -from gromos -to martini > > Hope it helps, > > Tsjerk > > > On Mon, Feb 29, 2016 at 11:20 AM, Jagannath Mondal < > jmondal.bac...@gmail.com > > wrote: > > > Dear Gromacs/Martini-users > > > > I wanted to transform a snapshot of my atomistic DPPG/water bilayer to > the > > Martini coarse-grained format. However, I found martinize.py script does > > not transform lipid or waters to coarse-grained counterpart.It only works > > for protein. So, Is there any particular way I can generate the CG > version > > of my atomistic DPPG/water bilayer ? > > > > I guess backward scripts does the reverse of what I am trying to achieve. > > So, if you can suggest a way to generate a coarse-grained pdb files of > the > > atomistic lipid bilayer/water, that will be very helpful. > > > > Jagannath > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > > > > -- > Tsjerk A. Wassenaar, Ph.D. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
